cachedir_set

Set directory to store back end files like kingdom summaries etc

Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized
way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome
retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL',
and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database
(Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve
functional annotation for genomic loci. In addition, users can download entire databases such
as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr',
'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. with only one command.

Hajk-Georg Drost

biomartr

Genomic Data Retrieval

Haakon Tjeldnes

cachedir_set function

<dl><dt>path</dt>
<dd>the path to cache dir, example "~/Bio_data/biomartr_cache/"</dd></dl>

Arguments

Set directory to store back end files like kingdom summaries etc — cachedir_set

<dl>

<dt>path</dt>
<dd>the path to cache dir, example "~/Bio_data/biomartr_cache/"</dd>

</dl>

cachedir_set: Set directory to store back end files like kingdom summaries etc

Description

Usage

Value

Arguments

See Also

Examples