getReleases

Retrieve available database releases or versions of
ENSEMBL.

Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized
way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome
retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL',
and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database
(Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve
functional annotation for genomic loci. In addition, users can download entire databases such
as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr',
'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. with only one command.

Hajk-Georg Drost

biomartr

Genomic Data Retrieval

Haakon Tjeldnes

getReleases function

<dl><dt>db</dt>
<dd>a character string specifying the database from which
available resease versions shall be retrieved:<ul>
<li><code>db = "ensembl"</code></li>
</ul></dd></dl>

Arguments

Author

Retrieve available database releases or versions
of ENSEMBL — getReleases

<dl>

<dt>db</dt>
<dd>a character string specifying the database from which
available resease versions shall be retrieved:<ul>
<li><code>db = "ensembl"</code></li>
</ul></dd>

</dl>

getReleases: Retrieve available database releases or versions of ENSEMBL

Description

Usage

Arguments

Author

Examples