read_gff

This function reads an organism specific CDS stored
in a defined file format.

Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized
way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome
retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL',
and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database
(Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve
functional annotation for genomic loci. In addition, users can download entire databases such
as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr',
'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. with only one command.

Hajk-Georg Drost

biomartr

Genomic Data Retrieval

Haakon Tjeldnes

read_gff function

<dl><dt>file</dt>
<dd>a character string specifying the path to the file
storing the CDS.</dd></dl>

Arguments

Author

Import GFF File — read_gff

<dl>

<dt>file</dt>
<dd>a character string specifying the path to the file
storing the CDS.</dd>

</dl>

read_gff: Import GFF File

Description

Usage

Value

Arguments

Author

Details

See Also