read_rm

This function reads an organism specific 
Repeat Masker output file.

Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized
way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome
retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL',
and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database
(Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve
functional annotation for genomic loci. In addition, users can download entire databases such
as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr',
'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. with only one command.

Hajk-Georg Drost

biomartr

Genomic Data Retrieval

Haakon Tjeldnes

read_rm function

<dl><dt>file</dt>
<dd>a character string specifying the path to the file 
storing the Repeat Masker output (e.g. retrieved with <code>getRepeatMasker</code>).</dd></dl>

Arguments

Author

Import Repeat Masker output file — read_rm

<dl>

<dt>file</dt>
<dd>a character string specifying the path to the file 
storing the Repeat Masker output (e.g. retrieved with <code>getRepeatMasker</code>).</dd>

</dl>

read_rm: Import Repeat Masker output file

Description

Usage

Arguments

Author

Details

See Also