biomod2 (version 3.5.1)

BIOMOD.models.out-methods: BIOMOD.models.out getters

Description

Functions to get attributes of BIOMOD_Modeling outputs

Usage

get_predictions(obj, ...)
  get_formal_data(obj, ...)
  get_evaluations(obj, ...)
  get_calib_lines(obj, ...)
  get_variables_importance(obj, ...)
  get_options(obj, ...)
  get_built_models(obj, ...)

Value

1. get_predictions: an array (or a data.frame) containing models predictions over calibrating and testing data (those used for evaluate models)

2. get_calib_lines: an array (or a data.frame) having the same dimension than the output of get_predictions() of logical values. All lines containing TRUE have been used to calibrate the model

3. get_evaluations: an array, a data.frame or a list containing models evaluation scores

4. get_variables_importance: an array containing models variables importance

5. get_options: a "BIOMOD.Model.Options" reporting options used to build individual models

6. get_formal_data: a "BIOMOD.formated.data" object containing data used for models building and evaluation, or a part of this object

7. get_built_models: a character vector giving the names of models successfully computed

Arguments

obj

"BIOMOD.models.out" object

...

extra arguments (see details)

Author

Wilfried Thuiller, Damien Georges

Details

... available values :

• get_evaluations

  • as.data.frame:"logical", ( FALSE by default ) if TRUE, a standardized data.frame will be produced else a 4-dimension array is returned

• get_calib_lines

• get_predictions (for BIOMOD_Modeling() outputs only)

  • as.data.frame:logical(default FALSE). If TRUE, models predictions will be returned as data.frame rather than array

  • evaluation:logical (default FALSE). If TRUE, model prediction over evaluation data will be returned

• get_formal_data

  • subinfo:character. Flag defining a specific information to extract from "BIOMOD.formated.data" object. Supported values are:

    • NULL: (default) the whole "BIOMOD.formated.data" object is returned

    • 'MinMax': All explanatory variables ranges returned

    • 'resp.var': Response variables vector returned

    • 'eval.resp.var': Evaluation response variables vector returned

    • 'expl.var': Explanatory variables data.frame returned

    • 'eval.expl.var': Evaluation explanatory variables data.frame returned

    • 'expl.var.names': Explanatory variables names returned

See Also

help