ModelsTable

A <code>data.frame</code> containing for each single model available in biomod2 
the package and functions to be called.

datasets

Functions for species distribution modeling, calibration and evaluation,
ensemble of models, ensemble forecasting and visualization. The package permits to run
consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences)
dataset and to combine them in ensemble models and ensemble projections. Some bench of other
evaluation and visualisation tools are also available within the package.

Maya Gueguen

biomod2

Ensemble Platform for Species Distribution Modeling

Wilfried Thuiller

Damien Georges

Robin Engler

Frank Breiner

Bruno Lafourcade

Remi Patin

Helene Blancheteau

ModelsTable function

A <code>data.frame</code> object with 12 rows and 5 variables:<dl>
 <dt>model</dt>
<dd>all single models that can be computed in biomod2</dd> <dt>type</dt>
<dd>data type associated to the models</dd> <dt>package</dt>
<dd><code>R</code> package used</dd> <dt>func</dt>
<dd>function used in the <code>R</code> package</dd> <dt>train</dt>
<dd>function called by caret for the tuning</dd>
</dl>All single models available are the following :
<ul>
<li>ANN (<code><a href="/link/nnet?package=biomod2&version=4.2-5" data-mini-rdoc="biomod2::nnet">nnet</a></code>)</li>
<li>CTA (<code><a href="/link/rpart?package=biomod2&version=4.2-5" data-mini-rdoc="biomod2::rpart">rpart</a></code>)</li>
<li>FDA (<code>fda</code>)</li>
<li>GAM (<code>gam</code>, <code><a href="/link/gam?package=biomod2&version=4.2-5" data-mini-rdoc="biomod2::gam">gam</a></code> or <code><a href="/link/bam?package=biomod2&version=4.2-5" data-mini-rdoc="biomod2::bam">bam</a></code>)</li>
<li>GBM (<code>gbm</code>)</li>
<li>GLM (<code><a href="/link/glm?package=biomod2&version=4.2-5" data-mini-rdoc="biomod2::glm">glm</a></code>)</li>
<li>MARS (<code>earth</code>)</li>
<li>MAXENT (<a href="https://biodiversityinformatics.amnh.org/open_source/maxent/">https://biodiversityinformatics.amnh.org/open_source/maxent/</a>)</li>
<li>MAXNET (<code>maxnet</code>)</li>
<li>RF (<code><a href="/link/randomForest?package=biomod2&version=4.2-5" data-mini-rdoc="biomod2::randomForest">randomForest</a></code>)</li>
<li>SRE (<code>bm_SRE</code>)</li>
<li>XGBOOST (<code>xgboost</code>)</li>
</ul>

Format

Single models package and functions — ModelsTable

A <code>data.frame</code> object with 12 rows and 5 variables:<dl>
 <dt>model</dt>
<dd>all single models that can be computed in biomod2</dd>

 <dt>type</dt>
<dd>data type associated to the models</dd>

 <dt>package</dt>
<dd><code>R</code> package used</dd>

 <dt>func</dt>
<dd>function used in the <code>R</code> package</dd>

 <dt>train</dt>
<dd>function called by caret for the tuning</dd>


</dl>

All single models available are the following :
<ul>
<li>ANN (<code><a href='https://rdrr.io/pkg/nnet/man/nnet.html'>nnet</a></code>)</li>
<li>CTA (<code><a href='https://rdrr.io/pkg/rpart/man/rpart.html'>rpart</a></code>)</li>
<li>FDA (<code>fda</code>)</li>
<li>GAM (<code>gam</code>, <code><a href='https://rdrr.io/pkg/mgcv/man/gam.html'>gam</a></code> or <code><a href='https://rdrr.io/pkg/mgcv/man/bam.html'>bam</a></code>)</li>
<li>GBM (<code>gbm</code>)</li>
<li>GLM (<code><a href='https://rdrr.io/r/stats/glm.html'>glm</a></code>)</li>
<li>MARS (<code>earth</code>)</li>
<li>MAXENT (<a href='https://biodiversityinformatics.amnh.org/open_source/maxent/'>https://biodiversityinformatics.amnh.org/open_source/maxent/</a>)</li>
<li>MAXNET (<code>maxnet</code>)</li>
<li>RF (<code><a href='https://rdrr.io/pkg/randomForest/man/randomForest.html'>randomForest</a></code>)</li>
<li>SRE (<code>bm_SRE</code>)</li>
<li>XGBOOST (<code>xgboost</code>)</li>
</ul>

Single models package and functions

ModelsTable: Single models package and functions

Description

Usage

Arguments

Format