Tools designed to perform and work with cluster analysis (including Tocher's algorithm), discriminant analysis and path analysis (standard and under collinearity), as well as some useful miscellaneous tools for dealing with sample size and optimum plot size calculations. Mantel's permutation test can be found in this package. A new approach for calculating its power is implemented. biotools also contains the new tests for genetic covariance components. An approach for predicting spatial gene diversity is implemented.
| Package: | biotools |
| Type: | Package |
| Version: | 3.1 |
| Date: | 2017-05-25 |
| License: | GPL (>= 2) |
Carvalho, S.P. (1995) Metodos alternativos de estimacao de coeficientes de trilha e indices de selecao, sob multicolinearidade. Ph.D. Thesis, Federal University of Vicosa (UFV), Vicosa, MG, Brazil.
Cruz, C.D.; Ferreira, F.M.; Pessoni, L.A. (2011) Biometria aplicada ao estudo da diversidade genetica. Visconde do Rio Branco: Suprema.
Lessman, K. J. & Atkins, R. E. (1963). Optimum plot size and relative efficiency of lattice designs for grain sorghum yield tests. Crop Sci., 3:477-481.
Mahalanobis, P. C. (1936) On the generalized distance in statistics. Proceedings of The National Institute of Sciences of India, 12:49-55.
Manly, B.F.J. (2004) Multivariate statistical methods: a primer. CRC Press.
Meier, V. D. & Lessman, K. J. (1971) Estimation of optimum field plot shape and size for testing yield in Crambe abyssinia Hochst. Crop Sci., 11:648-650.
Morrison, D.F. (1976) Multivariate Statistical Methods.
Rao, R.C. Advanced statistical methods in biometric research. New York: John Wiley & Sons, 1952.
Sharma, J.R. (2006) Statistical and biometrical techniques in plant breeding. Delhi: New Age International.
da Silva, A.R.; Malafaia, G.; Menezes, I.P.P. (2017) biotools: an R function to predict spatial gene diversity via an individual-based approach. Genetics and Molecular Research, 16: gmr16029655.
Silva, A.R. & Dias, C.T.S. (2013) A cophenetic correlation coefficient for Tocher's method. Pesquisa Agropecuaria Brasileira, 48:589-596.
Silva et al. (2013) Path analysis in multicollinearity for fruit traits of pepper. Idesia, 31:55-60.
Singh, D. (1981) The relative importance of characters affecting genetic divergence. Indian Journal Genetics & Plant Breeding, 41:237-245.