plotModuleWeb: plotModuleWeb

Description

This function takes an object of class moduleWeb and plots the modules found by function computeModules(...) onto the graph.

Usage

plotModuleWeb(moduleWebObject, plotModules = TRUE, 
rank = FALSE, weighted = TRUE, displayAlabels = TRUE, 
displayBlabels = TRUE, labsize = 1, xlabel = "", ylabel = "", 
square.border = "white", fromDepth = 0, upToDepth = -1)

Value

A plot window with appropriate size according to the dimensions of the web.

Arguments

moduleWebObject: An object of class "moduleWeb".
plotModules: If plotModules is true, modules are plotted onto the graph, otherwise only the graph itself is plotted.
rank: logical; if true, rows will be standardised for plotting, yielding a range from light to dark blue for each row; if false, values are ranged across the entire matrix. The latter is more faithful to the data, while the former makes lower levels more comparable, irrespective of marginal totals.
weighted: If weighted is true, the intensity of squares representing the edges corresponds with the edge weight, otherwise all squares representing existing edges have equal intensity.
displayAlabels: Row labels are plotted, iff displayAlabels is true.
displayBlabels: Column labels are plotted, iff displayBlabels is true.
labsize: labsize is the scalar factor with which the size of the plot labels can be changed.
xlabel: xlabel is the label for the x-axis.
ylabel: ylabel is the label for the y-axis.
square.border: Background color of area with squares.
fromDepth: Minimal depth of modules which should be plotted.
upToDepth: Maximal depth of modules which should be plotted. If upToDepth is smaller then fromDepth, all modules are plotted.

Author

Rouven Strauss

Examples

Run this code

if (FALSE) {
data(small1976)

moduleWebObject = computeModules(small1976);
plotModuleWeb(moduleWebObject);
}