bit (version 4.5.0)

intrle: Hybrid Index, C-coded utilities

Description

These C-coded utilitites speed up index preprocessing considerably.

Usage

intrle(x)
intisasc(x, na.method = c("none", "break", "skip")[2])
intisdesc(x, na.method = c("none", "break", "skip")[1])

Value

intrle returns an object of class rle or NULL, if rle-compression is not efficient (compression factor <3 or length(x)<3).

intisasc returns one of FALSE, NA, TRUE

intisdesc returns one of FALSE, TRUE (if the input contains NAs, the output is undefined)

Arguments

x

an integer vector

na.method

one of "none","break","skip", see details. The strange defaults stem from the initial usage.

Functions

• intisasc(): check whether integer vector is ascending

• intisdesc(): check whether integer vector is descending

Author

Jens Oehlschlägel

Details

intrle is by factor 50 faster and needs less RAM (2x its input vector) compared to rle which needs 9x the RAM of its input vector. This is achieved because we allow the C-code of intrle to break when it turns out, that rle-packing will not achieve a compression factor of 3 or better.
intisasc is a faster version of is.unsorted: it checks whether x is sorted.
intisdesc checks for being sorted descending and by default default assumes that the input x contains no NAs. na.method="none" treats NAs (the smallest integer) like every other integer and hence returns either TRUE or FALSE na.method="break" checks for NAs and returns either NA as soon as NA is encountered. na.method="skip" checks for NAs and skips over them, hence decides the return value only on the basis of non-NA values.

See Also

hi, rle, is.unsorted, is.sorted

Examples

  intrle(sample(1:10))
  intrle(diff(1:10))
  intisasc(1:10)
  intisasc(10:1)
  intisasc(c(NA, 1:10))
  intisdesc(1:10)
  intisdesc(c(10:1, NA))
  intisdesc(c(10:6, NA, 5:1))
  intisdesc(c(10:6, NA, 5:1), na.method="skip")
  intisdesc(c(10:6, NA, 5:1), na.method="break")