Run seqkit
seqkit(subcmd = NULL, ..., seqkit = NULL)A command object.
Sub-Command of seqkit.
<dynamic dots> Additional arguments passed to seqkit subcmd command. Empty arguments are automatically trimmed. If a single argument, such as a file path, contains spaces, it must be quoted, for example using shQuote(). Details see: cmd_help(seqkit subcmd()).
A string of path to seqkit command.
cmd_wd()/cmd_envvar()/cmd_envpath()/cmd_conda()
cmd_on_start()/cmd_on_exit()
cmd_on_succeed()/cmd_on_fail()
cmd_parallel()
Other commands:
allele_counter(),
cellranger(),
conda(),
fastq_pair(),
gistic2(),
kraken2(),
kraken_tools(),
perl(),
pyscenic(),
python(),
samtools(),
trust4()