coanc-deprecated

<p>Either the intermediate subpopulation coancestry matrix, or the vector of intermediate subpopulation \(F_{ST}\) values, or a scalar \(F_{ST}\) value shared by all intermediate subpopulations.</p>

<p>Construct the coancestry matrix of an admixture model</p>

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The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions.  The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters.  The BN-PSD model can be used to yield complex population structures.  Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.

Alejandro Ochoa

coanc-deprecated: Construct the coancestry matrix of an admixture model

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See Also