rgeno-deprecated

The IAF matrix (if Q is missing) or the intermediate subpopulation allele frequency matrix (if Q is present)

The optional admixture proportion matrix

If <code>TRUE</code>, the low-memory algorithm is used (Q must be present)

lowMem

Draw genotypes from the admixture model

internal

The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.

rgeno-deprecated: Draw genotypes from the admixture model

Description

Usage

Arguments

Value

See Also