rpiaf-deprecated

The matrix of intermediate subpopulation allele frequencies.

The matrix of admixture proportions.

Construct individual-specific allele frequency matrix under the PSD admixture model

internal

The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.

Alejandro Ochoa

rpiaf-deprecated: Construct individual-specific allele frequency matrix under the PSD admixture model

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