Plot, print and summary methods for netSimulator output.
# S3 method for netSimulator
plot(x, xvar = "factor(nCases)", yvar = c("sensitivity",
"specificity", "correlation"), xfacet = "measure",
yfacet = ".", color = NULL, ylim = c(0, 1), print =
TRUE, xlab = "Number of cases", ylab, outlier.size =
0.5, boxplot.lwd = 0.5, style = c("fancy", "basic"),
...)
# S3 method for netSimulator
print(x, digits = 2, ...)
# S3 method for netSimulator
summary(object, digits = 2, ...)# S3 method for replicationSimulator
plot(x, yvar = c("correlation", "jaccard",
"replicatedEdges", "replicatedZeroes"), ...)
# S3 method for replicationSimulator
print(x, digits = 2, ...)
# S3 method for replicationSimulator
summary(object, digits = 2, ...)
Output of netSimulator.
Output of netSimulator.
String indicating the variable to be used on the x-axis.
String vector indicating the variable(s) to be used on the y-axis.
String indicating the variable to be used on the horizontal facets (or "." to omit).
String indicating the variable to be used on the vertical facets (or "." to omit).
String indicating the variable to be used in coloring boxplots.
Y-axis limits.
Logical, should the plot be printed? This helps printing the plots to PDF files.
Number of digits to be used in print and summary method.
X-axis label
Y-axis label. Defaults to combining the values in yvar. Is hidden when xfacet = "measure", as then it is clear what the y-axis represent from the facet labels.
Size of the outliers as plotted in boxplots.
Line width of the boxplots
"fance" for a style including several aesthethic enhancements, and "basic" for a as simple as possible style.
Arguments sent to "plot.netSimulator" from "plot.replicationSimulator"
Sacha Epskamp <mail@sachaepskamp.com>