aal116

aal90

aal2.120

aal2.94

Datasets containing spatial coordinates for the original AAL atlases and the
newer AAL2 atlases, along with indices for the major lobes and hemispheres of
the brain.

datasets

A set of tools for performing graph theory analysis of brain MRI
data. It works with data from a Freesurfer analysis (cortical thickness,
volumes, local gyrification index, surface area), diffusion tensor
tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from
DPABI). It contains a graphical user interface for graph visualization and
data exploration, along with several functions for generating useful
figures.

Christopher G Watson

brainGraph

Graph Theory Analysis of Brain MRI Data

Christopher G. Watson

AAL function

A data frame with 90 or 116 (for the original AAL atlases), or 94 or
120 (for the newer AAL2 atlases) observations on the following 7 variables:<dl class="dl-horizontal">
 <dt><code>name</code></dt><dd>a character vector of region names</dd>
 <dt><code>x.mni</code></dt><dd>a numeric vector of x-coordinates (in MNI space)</dd>
 <dt><code>y.mni</code></dt><dd>a numeric vector of y-coordinates (in MNI space)</dd>
 <dt><code>z.mni</code></dt><dd>a numeric vector of z-coordinates (in MNI space)</dd>
 <dt><code>lobe</code></dt><dd>a factor with levels <code>Frontal</code> <code>Parietal</code>
 <code>Temporal</code> <code>Occipital</code> <code>Insula</code> <code>Limbic</code> <code>SCGM</code>
 and <code>Cerebellum</code> (for <code>aal116</code> and <code>aal2.120</code>)</dd>
 <dt><code>hemi</code></dt><dd>a factor with levels <code>L</code> <code>R</code></dd>
 <dt><code>index</code></dt><dd>a numeric vector</dd>
</dl>

Format

Coordinates for data from the AAL-based atlases — AAL

A data frame with 90 or 116 (for the original AAL atlases), or 94 or
120 (for the newer AAL2 atlases) observations on the following 7 variables:<dl class='dl-horizontal'>
 <dt><code>name</code></dt><dd>a character vector of region names</dd>
 <dt><code>x.mni</code></dt><dd>a numeric vector of x-coordinates (in MNI space)</dd>
 <dt><code>y.mni</code></dt><dd>a numeric vector of y-coordinates (in MNI space)</dd>
 <dt><code>z.mni</code></dt><dd>a numeric vector of z-coordinates (in MNI space)</dd>
 <dt><code>lobe</code></dt><dd>a factor with levels <code>Frontal</code> <code>Parietal</code>
 <code>Temporal</code> <code>Occipital</code> <code>Insula</code> <code>Limbic</code> <code>SCGM</code>
 and <code>Cerebellum</code> (for <code>aal116</code> and <code>aal2.120</code>)</dd>
 <dt><code>hemi</code></dt><dd>a factor with levels <code>L</code> <code>R</code></dd>
 <dt><code>index</code></dt><dd>a numeric vector</dd>
</dl>

AAL: Coordinates for data from the AAL-based atlases

Description

Usage

Arguments

Format

References