This is a convenience function for plotting a graph based on results from
NBS. There are several default arguments that are set:
vertex/edge colors will correspond to connected component membership, and
only those vertices in which V(g)$p.nbs > 1 - alpha will be shown.
Finally, vertex names will be omitted.
# S3 method for brainGraph_NBS
plot(x, alpha = 0.05,
subgraph = paste("p.nbs >", 1 - alpha), vertex.label = NA,
vertex.color = "color.comp", edge.color = "color.comp",
subt = NULL, main = paste0("\n\nNBS: ", x$name), cex.main = 2,
...)A brainGraph_NBS graph object (from
make_nbs_brainGraph)
Numeric; the significance level (default: 0.05)
Character string specifying the condition for subsetting the
graph. By default, it will show only the vertices which are members of
components determined to be significant based on alpha.
Character vector of the vertex labels to be displayed. Default behavior is to omit them.
Character string specifying the vertex attribute to color
the vertices by (default: color.comp, which groups vertices by
connected component)
Character string specifying the edge attribute to color
the edges by (default: color.comp, which groups edges by connected
component)
Character string; the subtitle (default: default)
Character string; the main title (default: NULL)
Numeric; the scaling factor for text size; see
par (default: 2)
Other arguments passed to plot.brainGraph
Other Plotting functions: plot.brainGraph_GLM,
plot.brainGraph_mediate,
plot.brainGraph_mtpc,
plot.brainGraph,
plot_brainGraph_gui,
plot_brainGraph_list,
plot_brainGraph_multi