stancode.brmsfit

Extract Stan code from a fitted brms model.

Fit Bayesian generalized (non-)linear multivariate multilevel models
using 'Stan' for full Bayesian inference. A wide range of distributions
and link functions are supported, allowing users to fit -- among others --
linear, robust linear, count data, survival, response times, ordinal,
zero-inflated, hurdle, and even self-defined mixture models all in a
multilevel context. Further modeling options include both theory-driven and
data-driven non-linear terms, auto-correlation structures, censoring and
truncation, meta-analytic standard errors, and quite a few more.
In addition, all parameters of the response distribution can be predicted
in order to perform distributional regression. Prior specifications are
flexible and explicitly encourage users to apply prior distributions that
actually reflect their prior knowledge. Models can easily be evaluated and
compared using several methods assessing posterior or prior predictions.
References: Bürkner (2017) <doi:10.18637/jss.v080.i01>;
Bürkner (2018) <doi:10.32614/RJ-2018-017>;
Bürkner (2021) <doi:10.18637/jss.v100.i05>; Carpenter et al. (2017)
<doi:10.18637/jss.v076.i01>.

PaulChristian Buerkner

brms

Bayesian Regression Models using 'Stan'

Paul-Christian Bürkner

Jonah Gabry

Sebastian Weber

Andrew Johnson

Martin Modrak

Hamada S. Badr

Frank Weber

Aki Vehtari

Mattan S. Ben-Shachar

Hayden Rabel

Simon C. Mills

Stephen Wild

Ven Popov

stancode.brmsfit function

<dl><dt>object</dt>
<dd>An object of class <code>brmsfit</code>.</dd>
<dt>version</dt>
<dd>Logical; indicates if the first line containing the brms
version number should be included. Defaults to <code>TRUE</code>.</dd>
<dt>regenerate</dt>
<dd>Logical; indicates if the Stan code should be regenerated
with the current brms version. By default, <code>regenerate</code> will be
<code>FALSE</code> unless required to be <code>TRUE</code> by other arguments.</dd>
<dt>threads</dt>
<dd>Controls whether the Stan code should be threaded. See
<code>threading</code> for details.</dd>
<dt>backend</dt>
<dd>Controls the Stan backend. See <code>brm</code> for details.</dd>
<dt>...</dt>
<dd>Further arguments passed to
<code>stancode</code> if the Stan code is
regenerated.</dd></dl>

Arguments

Extract Stan code from brmsfit objects — stancode.brmsfit

<dl>

<dt>object</dt>
<dd>An object of class <code>brmsfit</code>.</dd>


<dt>version</dt>
<dd>Logical; indicates if the first line containing the brms
version number should be included. Defaults to <code>TRUE</code>.</dd>


<dt>regenerate</dt>
<dd>Logical; indicates if the Stan code should be regenerated
with the current brms version. By default, <code>regenerate</code> will be
<code>FALSE</code> unless required to be <code>TRUE</code> by other arguments.</dd>


<dt>threads</dt>
<dd>Controls whether the Stan code should be threaded. See
<code>threading</code> for details.</dd>


<dt>backend</dt>
<dd>Controls the Stan backend. See <code>brm</code> for details.</dd>


<dt>...</dt>
<dd>Further arguments passed to
<code>stancode</code> if the Stan code is
regenerated.</dd>

</dl>

Extract Stan code from <code>brmsfit</code> objects

stancode.brmsfit: Extract Stan code from `brmsfit` objects

Description

Usage

Value

Arguments