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bsub (version 1.1.0)

Submitter and Monitor of the 'LSF Cluster'

Description

It submits R code/R scripts/shell commands to 'LSF cluster' (, the 'bsub' system) without leaving R. There is also an interactive 'shiny' app for monitoring the job status.

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Version

Install

install.packages('bsub')

Monthly Downloads

260

Version

1.1.0

License

MIT + file LICENSE

Issues

7

Pull Requests

0

Stars

25

Forks

5

Maintainer

Zuguang Gu

Last Published

July 1st, 2021

Functions in bsub (1.1.0)

bkill

Kill jobs
bjobs_done

Finished jobs
bjobs_barplot

Barplot of number of jobs
bsub_chunk

Submit R code
bjobs_exit

Failed jobs
bjobs_pending

Pending jobs
bjobs_running

Running jobs
bjobs_timeline

Timeline of jobs
get_dependency

Get the dependency of current jobs
is_job_finished

Test whether the jobs are finished
bsub_opt

Parameters for bsub
wait_jobs

Wait until all jobs are finished
plot_dependency

Plot the job dependency tree
print.bconf

Print the configurations
bsub_script

Submit R script
job_log

Log for the running/finished/failed job
bsub_cmd

Submit shell commands
job_status_by_name

Job status by name
monitor

A browser-based interactive job monitor
job_status_by_id

Job status by id
random_job

Submit a random job
clear_temp_dir

Clear temporary dir
check_dump_files

Check whether there are dump files
print.bjobs

Summary of jobs
ssh_connect

Connect to submisstion via ssh
ssh_disconnect

Disconnect ssh connection
run_cmd

Run command on submission node
retrieve_var

Retrieve saved variable
brecent

Recent jobs from all status
bjobs

Summary of jobs
bconf

Print current configuation