Learn R Programming

bsub (version 1.1.0)

Submitter and Monitor of the 'LSF Cluster'

Description

It submits R code/R scripts/shell commands to 'LSF cluster' (, the 'bsub' system) without leaving R. There is also an interactive 'shiny' app for monitoring the job status.

Copy Link

Version

Install

install.packages('bsub')

Monthly Downloads

229

Version

1.1.0

License

MIT + file LICENSE

Issues

7

Pull Requests

0

Stars

25

Forks

5

Maintainer

Zuguang Gu

Last Published

July 1st, 2021

Functions in bsub (1.1.0)

bkill

Kill jobs
bjobs_done

Finished jobs
bjobs_barplot

Barplot of number of jobs
bsub_chunk

Submit R code
bjobs_exit

Failed jobs
bjobs_pending

Pending jobs
bjobs_running

Running jobs
bjobs_timeline

Timeline of jobs
get_dependency

Get the dependency of current jobs
is_job_finished

Test whether the jobs are finished
bsub_opt

Parameters for bsub
wait_jobs

Wait until all jobs are finished
plot_dependency

Plot the job dependency tree
print.bconf

Print the configurations
bsub_script

Submit R script
job_log

Log for the running/finished/failed job
bsub_cmd

Submit shell commands
job_status_by_name

Job status by name
monitor

A browser-based interactive job monitor
job_status_by_id

Job status by id
random_job

Submit a random job
clear_temp_dir

Clear temporary dir
check_dump_files

Check whether there are dump files
print.bjobs

Summary of jobs
ssh_connect

Connect to submisstion via ssh
ssh_disconnect

Disconnect ssh connection
run_cmd

Run command on submission node
retrieve_var

Retrieve saved variable
brecent

Recent jobs from all status
bjobs

Summary of jobs
bconf

Print current configuation