bumphunter package - RDocumentation

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This is the developer version of the bumphunter R/Bioconductor package.

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Version

Version

1.12.0

License

Artistic-2.0

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Repository

https://github.com/ririzarr/bumphunter

Maintainer

Rafael A Irizarry

Last Published

February 15th, 2017

Functions in bumphunter (1.12.0)

annotateTranscripts

Annotate transcripts

Find non-zero regions in vector

Make clusters of genomic locations based on distance

Smooth genomic profiles

runmedByCluster

Apply running median smoothing to values within each spatially-defined cluster

Segment a vector into positive, zero, and negative regions

Find and annotate closest genes to genomic regions

locfitByCluster

Apply local regression smoothing to values within each spatially-defined cluster.

annotateNearest

Annotate the results of nearest

Generate dummy data for use with bumphunter functions

Apply loess smoothing to values within each spatially-defined cluster.