cds (version 1.0.4)

plot.cds: Plot cds Objects

Description

Plot method for cds objects

Usage

# S3 method for cds
plot(
  x,
  which = 1L:3L,
  type = "l",
  lty = 1,
  lwd = 2,
  show.legend = TRUE,
  col = colorspace::rainbow_hcl(nr),
  bty.legend = "n",
  intercept = ncol(x$alphamat) == 4,
  scale = FALSE,
  add = FALSE,
  exp.factor = 1.2,
  bubble.fact = 0.12,
  cont.factor = 0.01,
  pch = 15,
  ...
)

Arguments

x

An object of class cds.

which

A numeric vector: a subset of 1:3 specifying the plots to produce.

type

Passed to matplot.

lty

Passed to matplot.

lwd

Passed to matplot.

show.legend

Logical; should a legend be added to the plot or not.

col

Passed to matplot.

bty.legend

Passed to legend.

intercept

Logical indicating whether to plot the intercept.

scale

Logical indicating whether an intercept should be included or not.

add

Logical; add to plot or not?

exp.factor

Factor for expanding the x- and y-limits.

bubble.fact

Passed to calc.wt.bubbles as argument fact.

cont.factor

Continuity correction to apply in case one of the alpha's are equal to zero.

pch

Plotting character to use.

...

Additional arguments passed to points.