bdgpbiomart

See the vignette End-to-end analysis of 
cell-based screens: from raw intensity readings 
to the annotated hit list, 
Section Using biomaRt to annotate the target
genes online for details. The annotations were obtained on
21 September 2007.

datasets

This package provides tools for the analysis of high-throughput assays that were performed in microtitre plate formats (including but not limited to 384-well plates). The functionality includes data import and management, normalisation, quality assessment, replicate summarisation and statistical scoring. A webpage that provides a detailed graphical overview over the data and analysis results is produced. In our work, we have applied the package to RNAi screens on fly and human cells, and for screens of yeast libraries. See ?cellHTS2 for a brief introduction.

Joseph Barry

cellHTS2

Analysis of cell-based screens - revised version of cellHTS

bdgpbiomart function

Dataframe with 21888 rows and 11 columns
<code>plate</code>, <code>well</code>, <code>controlStatus</code>, <code>HFAID</code>, <code>GeneID</code>,
<code>chromosome_name</code>, <code>start_position</code>, <code>end_position</code>, <code>description</code>,
<code>flybasename_gene</code>, <code>go</code>, <code>go_description</code>.

Format

Source

See the vignette End-to-end analysis of 
cell-based screens: from raw intensity readings 
to the annotated hit list, 
Section Using biomaRt to annotate the target
genes online for details. The annotations were obtained on
21 September 2007.

bdgpbiomart: Dataset with annotation of CG identifiers

Description

Usage

Arguments

Format

Source

Examples