is_rules

Check if obj$rules looks as expected.

Annotate single-cell RNA sequencing data manually based on
marker gene thresholds.
Find cell type rules (gene+threshold) through exploration,
use the popular piping operator '%>%' to reconstruct complex
cell type hierarchies.
'cellpypes' models technical noise to find positive and negative cells for
a given expression threshold and returns cell type labels or pseudobulks.
Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
features.

Felix Frauhammer

cellpypes

Cell Type Pipes for Single-Cell RNA Sequencing Data

is_rules function

<dl><dt>rules</dt>
<dd>The obj$rules slot of a cellpypes object.</dd></dl>

Arguments

Check if obj$rules looks as expected. — is_rules

<dl>

<dt>rules</dt>
<dd>The obj$rules slot of a cellpypes object.</dd>

</dl>

is_rules: Check if obj$rules looks as expected.

Description

Usage

Value

Arguments