pype_code_template

This function rule code snippet with neat
text alignment to the console.
Paste this into your script and start changing the rules.

Annotate single-cell RNA sequencing data manually based on
marker gene thresholds.
Find cell type rules (gene+threshold) through exploration,
use the popular piping operator '%>%' to reconstruct complex
cell type hierarchies.
'cellpypes' models technical noise to find positive and negative cells for
a given expression threshold and returns cell type labels or pseudobulks.
Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
features.

Felix Frauhammer

cellpypes

Cell Type Pipes for Single-Cell RNA Sequencing Data

pype_code_template function

<dl><dt>n_rules</dt>
<dd>Number of lines (rules) to generate</dd></dl>

Arguments

Generate code template for cellpype rules — pype_code_template

<dl>

<dt>n_rules</dt>
<dd>Number of lines (rules) to generate</dd>

</dl>

pype_code_template: Generate code template for cellpype rules

Description

Usage

Value

Arguments

Examples