tree_ancestry

Find parent, parent's parent and so on for a class using recursive programming

internal

Annotate single-cell RNA sequencing data manually based on
marker gene thresholds.
Find cell type rules (gene+threshold) through exploration,
use the popular piping operator '%>%' to reconstruct complex
cell type hierarchies.
'cellpypes' models technical noise to find positive and negative cells for
a given expression threshold and returns cell type labels or pseudobulks.
Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
features.

Felix Frauhammer

cellpypes

Cell Type Pipes for Single-Cell RNA Sequencing Data

tree_ancestry function

<dl><dt>classes</dt>
<dd>The class definitions of a cellpypes object, i.e. obj$classes.</dd>
<dt>class</dt>
<dd>A character vector of length one with the class.</dd></dl>

Arguments

Find parent, parent's parent and so on for a class using recursive programming — tree_ancestry

<dl>

<dt>classes</dt>
<dd>The class definitions of a cellpypes object, i.e. obj$classes.</dd>


<dt>class</dt>
<dd>A character vector of length one with the class.</dd>

</dl>

tree_ancestry: Find parent, parent's parent and so on for a class using recursive programming

Description

Usage

Value

Arguments