tree_descendants

Find child, child's child and so on for class(es) using recursive programming

internal

Annotate single-cell RNA sequencing data manually based on
marker gene thresholds.
Find cell type rules (gene+threshold) through exploration,
use the popular piping operator '%>%' to reconstruct complex
cell type hierarchies.
'cellpypes' models technical noise to find positive and negative cells for
a given expression threshold and returns cell type labels or pseudobulks.
Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
features.

Felix Frauhammer

cellpypes

Cell Type Pipes for Single-Cell RNA Sequencing Data

tree_descendants function

<dl><dt>classes</dt>
<dd>The class definitions of a cellpypes object, i.e. obj$classes.</dd>
<dt>class</dt>
<dd>A character vector with one or multiple classes.</dd>
<dt>leafs</dt>
<dd>Has to be the output of tree_leaf_nodes(classes). It's passed
as argument so that tree_leaf_nodes is not executed in each recursion.</dd></dl>

Arguments

Find child, child's child and so on for class(es) using recursive programming — tree_descendants

<dl>

<dt>classes</dt>
<dd>The class definitions of a cellpypes object, i.e. obj$classes.</dd>


<dt>class</dt>
<dd>A character vector with one or multiple classes.</dd>


<dt>leafs</dt>
<dd>Has to be the output of tree_leaf_nodes(classes). It's passed
as argument so that tree_leaf_nodes is not executed in each recursion.</dd>

</dl>

tree_descendants: Find child, child's child and so on for class(es) using recursive programming

Description

Usage

Value

Arguments