tree_leaf_nodes

Finds leaf nodes, i.e. classes without children

internal

Annotate single-cell RNA sequencing data manually based on
marker gene thresholds.
Find cell type rules (gene+threshold) through exploration,
use the popular piping operator '%>%' to reconstruct complex
cell type hierarchies.
'cellpypes' models technical noise to find positive and negative cells for
a given expression threshold and returns cell type labels or pseudobulks.
Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
features.

Felix Frauhammer

cellpypes

Cell Type Pipes for Single-Cell RNA Sequencing Data

tree_leaf_nodes function

<dl><dt>classes</dt>
<dd>Put obj$classes here, i.e. a tree of class definitions
created with the rule function.</dd>
<dt>invert</dt>
<dd>If TRUE, return classes that are NOT leafs instead of leaf nodes.</dd></dl>

Arguments

Finds leaf nodes, i.e. classes without children — tree_leaf_nodes

<dl>

<dt>classes</dt>
<dd>Put obj$classes here, i.e. a tree of class definitions
created with the rule function.</dd>


<dt>invert</dt>
<dd>If TRUE, return classes that are NOT leafs instead of leaf nodes.</dd>

</dl>

tree_leaf_nodes: Finds leaf nodes, i.e. classes without children

Description

Usage

Value

Arguments