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CGEN (version 3.8.0)
An R package for analysis of case-control studies in genetic epidemiology
Description
An R package for analysis of case-control studies in genetic epidemiology.
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Version
Version
3.8.0
3.4.0
3.2.0
3.0.1
Version
3.8.0
License
GPL-2 + file LICENSE
Maintainer
Bill Wheeler
Last Published
February 15th, 2017
Functions in CGEN (3.8.0)
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getMatchedSets
Case-Control and Nearest-Neighbor Matching
Manhattan.plot
Manhattan plot
QQ.plot
QQ plot
LocusMapData
Locus map data
getSummary
Compute summary information
snp.score
Score Test
pheno.list
List to describe the covariate and outcome data
getWaldTest
Compute a Wald test
subject.list
List to describe the file of subject ids
printEffects
Print an effects table
locusMap.list
List to describe the locus map data
snp.logistic
Logistic regression analysis for a single SNP
CGEN
An R package for analysis of case-control studies in genetic epidemiology
snp.effects.plot
Effects plot
additive.test
A test for gene-environment interaction under an additive risk model for case-control data
GxE.scan
GxE analysis for an array of SNPs
snp.matched
Robust G-G and G-E Interaction with Finely-Matched Case-Control Data.
snp.effects
Joint and Stratified Effects
GxE.scan.combine
Combines output files into one file
GxE.scan.partition
Creates GxE.scan job files for a computing cluster
Xdata
Sample covariate and outcome data
snp.list
List to describe the genotype data