cghseg (version 1.0.5)

calling<-: Replace slot calling

Description

changes slot calling of a CGHoptions object

Arguments

.Object

an object of the CGHoptions class

Value

None

Details

CGHo["calling"] determines if calling should be done during segmentation (logical). The number of levels is fixed and set in CGHo["nblevels"]

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

See Also

nblevels

Examples

# NOT RUN {
set.seed(1)
simul         = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
CGHd          = new("CGHdata",Y=simul$Y)
CGHo          = new("CGHoptions")
calling(CGHo) = TRUE
# }