cghseg (version 1.0.5)

getbp: Breakpoints frequencies

Description

Gives the frequency of breakpoints

Usage

getbp(.Object)

Arguments

.Object

object of class CGHresults

Value

bplist

list of dataframes containing 0/1 for the position of the breaks

References

Joint segmentation, calling and normalization of multiple CGH profiles, Biostatistics (2011)

Examples

# NOT RUN {
set.seed(1)
simul          = simulprofiles(M=5,n=100,k.mean=2,SNR=5,lambda=1)
CGHd           = new("CGHdata",Y=simul$Y)
CGHo           = new("CGHoptions")
CGHr           = multiseg(CGHd,CGHo)
bplist         = getbp(CGHr)
# }