clusterMaker


Vector of positions within chromosomes.



order probes if they are not already ordered.


order.it


maximum allowable gap between probe start positions for probes to be grouped into the same region. 


maxGap


Redefine array regions given chromosomal coordinates.


This package implements analysis tools for DNA methylation
data generated using Nimblegen microarrays and the McrBC
protocol. It finds differentially methylated regions between
samples, calculates percentage methylation estimates and
includes array quality assessment tools.

Peter Murakami

charm

Analysis of DNA methylation data from CHARM microarrays

clusterMaker function

order probes if they are not already ordered.

maximum allowable gap between probe start positions for probes to be grouped into the same region.

Redefine array regions given chromosomal coordinates.

clusterMaker: Redefine array regions given chromosomal coordinates.

Description

Usage

Arguments

Details

See Also

Examples