pmQuality

channel


logical value for whether or not to print message to screen


verbose


vector of probe indices specifying which probes to evaluate.  By default all pm probes are used.



pmQuality calculates probe quality for each pm probe by comparing the total DNA signal (green) to the distribution of the background probe signals. 0 means lower than all background probes. 100 means higher than all background probes.


This package implements analysis tools for DNA methylation
data generated using Nimblegen microarrays and the McrBC
protocol. It finds differentially methylated regions between
samples, calculates percentage methylation estimates and
includes array quality assessment tools.

Peter Murakami

charm

Analysis of DNA methylation data from CHARM microarrays

pmQuality function

logical value for whether or not to print message to screen

vector of probe indices specifying which probes to evaluate.  By default all pm probes are used.

pmQuality calculates probe quality for each pm probe by comparing the total DNA signal (green) to the distribution of the background probe signals. 0 means lower than all background probes. 100 means higher than all background probes.

pmQuality: Calculate probe quality scores

Description

Usage

Arguments

See Also

Examples