cheddar (version 0.1-639)

CollectionNPS: Collection node properties

Description

Returns a data.frame of first-class and computed node properties of communities in a CommunityCollection.

Usage

CollectionNPS(collection, properties=NULL)

Value

A data.frame.

Arguments

collection

an object of class CommunityCollection.

properties

names of the properties. These can be names of first-class properties and names of functions. Names must meet the criteria of the properties parameter of NPS.

Author

Lawrence Hudson

Details

This function is named CollectionNPS for Collection Node PropertieS. If properties is NULL, all first-class node properties are included in the returned data.frame.

See Also

NPS, CommunityCollection

Examples

data(pHWebs) 
head(CollectionNPS(pHWebs), 10)

head(CollectionNPS(pHWebs, 'M'), 10)

# Biomass is a function
head(CollectionNPS(pHWebs, 'Biomass'), 10)

head(CollectionNPS(pHWebs, c(B='Biomass')), 10)

# Several first-class and computed properties
head(CollectionNPS(pHWebs, c('M', 'N', B='Biomass', 'TrophicSpecies', 
                             TL='PreyAveragedTrophicLevel')), 10)

# Pass parameters to functions
head(CollectionNPS(pHWebs, 
                   list(TS1='TrophicSpecies', 
                        TS2=list('TrophicSpecies', include.isolated=FALSE), 
                        Iso='IsIsolatedNode')), 10)