chipPCR (version 1.0-2)

plot.refMFI: Plot refMFI objects

Description

Draw quick diagnostic plots of amplification reaction.

Usage

# S4 method for refMFI
plot(x, CV = FALSE, type = "p", pch = 19, length = 0.05, 
                        col = "black")
# S4 method for refMFI,refMFI
plot(x, y, CV = FALSE, type = "p", pch = 19, length = 0.05, 
                        col = "black")

Arguments

x

is a '>refMFI object. refMFI means referenced Mean Fluorescence Intensity (Roediger et al. 2013)

y

optionally an additional '>refMFI object.

CV

If CV is true the coefficient of variation (RSD, CV) is plotted. If set to FALSE the deviation as Standard Deviation or Median Absolute Deviation is plotted.

type

is a graphical parameter setting the plot use lines, points or both (see plot).

pch

is a graphical parameter used to define the symbol used in the plot.

length

length is a graphical parameter used to define the length of the error bar used in the plot.

col

col is a graphical parameter used to define the length of the error bar used in the plot.

Value

No return value, called for side effects.

Details

This function is a relative of the MFIerr function from the MBmca package (Roediger et al. 2013, The R Journal). The plot being a result of this function is built from three subplots. If y parameter is not absent, it is plotted in lighter color than x.

References

Roediger S, Boehm A, Schimke I. Surface Melting Curve Analysis with R. The R Journal 2013;5:37--53.

See Also

'>refMFI