chromer

chromer-package

This package is a R based interface to the Chromosome Counts Database (CCDB). Currently, this consists of just one function <code>chrom_counts</code>, which queries the database using the taxa supplied. The function <code>summarize_counts</code> cleans and processes the data.

internal

A programmatic interface to the Chromosome Counts Database
(<https://taux.evolseq.net/CCDB_web/>), Rice et al. (2014) <doi:10.1111/nph.13191>.
This package is part of the 'ROpenSci' suite (<https://ropensci.org>).

Karl Broman

Interface to Chromosome Counts Database API

Matthew Pennell

Paula Andrea Martinez

Karl W Broman

chromer-package function

Maintainer: Karl W Broman <a href="/link/broman%40wisc.edu?package=chromer&version=0.8" data-mini-rdoc="chromer::broman@wisc.edu">broman@wisc.edu</a> (<a href="https://orcid.org/0000-0002-4914-6671">ORCID</a>)
Authors:<ul>
<li>Matthew Pennell <a href="/link/mwpennell%40gmail.com?package=chromer&version=0.8" data-mini-rdoc="chromer::mwpennell@gmail.com">mwpennell@gmail.com</a> (<a href="https://orcid.org/0000-0002-2886-3970">ORCID</a>)</li>
<li>Paula Andrea Martinez <a href="/link/orchid00%40gmail.com?package=chromer&version=0.8" data-mini-rdoc="chromer::orchid00@gmail.com">orchid00@gmail.com</a> (<a href="https://orcid.org/0000-0002-8990-1985">ORCID</a>)</li>
</ul>

Author

Chromer: Programmatic access to Chromosome Counts Database — chromer-package

Maintainer: Karl W Broman <a href='mailto:broman@wisc.edu'>broman@wisc.edu</a> (<a href='https://orcid.org/0000-0002-4914-6671'>ORCID</a>)
Authors:<ul>
<li>Matthew Pennell <a href='mailto:mwpennell@gmail.com'>mwpennell@gmail.com</a> (<a href='https://orcid.org/0000-0002-2886-3970'>ORCID</a>)</li>
<li>Paula Andrea Martinez <a href='mailto:orchid00@gmail.com'>orchid00@gmail.com</a> (<a href='https://orcid.org/0000-0002-8990-1985'>ORCID</a>)</li>
</ul>

chromer-package: Chromer: Programmatic access to Chromosome Counts Database

Description

Arguments

Author

References

See Also