circos.initializeCircularGenome

Initialize a layout for circular genome

Circular layout is an efficient way for the visualization of huge
amounts of information. Here this package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of the package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
it gives users more convenience and freedom to design figures for
better understanding complex patterns behind multiple dimensional data.
The package is described in Gu et al. 2014 <doi:10.1093/bioinformatics/btu393>.

Zuguang Gu

circlize

Circular Visualization

circos.initializeCircularGenome function

<dl>
 <dt>name</dt>
<dd>Name of the genome (or the "chromosome name").</dd> <dt>genome_size</dt>
<dd>Size of the genome</dd> <dt>plotType</dt>
<dd>Pass to <code>circos.genomicInitialize</code>.</dd> <dt>...</dt>
<dd>All goes to <code>circos.genomicInitialize</code>.</dd>
</dl>

Arguments

Initialize a layout for circular genome — circos.initializeCircularGenome

<dl>


 <dt>name</dt>
<dd>Name of the genome (or the "chromosome name").</dd>

 <dt>genome_size</dt>
<dd>Size of the genome</dd>

 <dt>plotType</dt>
<dd>Pass to <code>circos.genomicInitialize</code>.</dd>

 <dt>...</dt>
<dd>All goes to <code>circos.genomicInitialize</code>.</dd>


</dl>

circos.initializeCircularGenome: Initialize a layout for circular genome

Description

Usage

Arguments

Examples