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clValid (version 0.7)

Validation of Clustering Results

Description

Statistical and biological validation of clustering results. This package implements Dunn Index, Silhouette, Connectivity, Stability, BHI and BSI. Further information can be found in Brock, G et al. (2008) .

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Version

Install

install.packages('clValid')

Monthly Downloads

2,916

Version

0.7

License

LGPL-3

Maintainer

Vasyl Pihur

Last Published

February 14th, 2021

Functions in clValid (0.7)

mouse

Mouse Mesenchymal Cells
dunn

Dunn Index
BHI

Biological Homogeneity Index
clValid-internal

Internal clValid functions
stability

Stability Measures
BSI

Biological Stability Index
clValid-class

Class "clValid"
getRanksWeights

Extract ranks and weights from clValid object
connectivity

Connectivity Measure
annotationListToMatrix

Change annotation list to matrix
readAnnotationFile

Read in biological annotation files from external file
clValid

Validate Cluster Results
plot.sota

Plot Function for a SOTA Object
sota

Self-organizing Tree Algorithm (SOTA)
print.sota

Print Function for a SOTA Object