clinColors

Default color palette is the color-blind viridis palette.
See documentation of <code><a href="https://sjmgarnier.github.io/viridisLite/reference/viridis.html">viridis</a></code>.

Utility functions to facilitate the import,
the reporting and analysis of clinical data.
Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains
from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate
the package functionalities.

Laure Cougnaud

clinUtils

General Utility Functions for Analysis of Clinical Data

Michela Pasetto

Arne De Roeck

Open Analytics 

clinColors function

<dl><dt>n</dt>
<dd>The number of colors (\(\ge 1\)) to be in the palette.</dd>
<dt>alpha</dt>
<dd>The alpha transparency, a number in [0,1], see argument alpha in
<code><a href="/link/hsv?package=clinUtils&version=0.1.4" data-mini-rdoc="clinUtils::hsv">hsv</a></code>.</dd>
<dt>begin</dt>
<dd>The (corrected) hue in [0,1] at which the color map begins.</dd>
<dt>end</dt>
<dd>The (corrected) hue in [0,1] at which the color map ends.</dd>
<dt>direction</dt>
<dd>Sets the order of colors in the scale. If 1, the default,
colors are ordered from darkest to lightest. If -1, the order of colors is
reversed.</dd>
<dt>option</dt>
<dd>A character string indicating the color map option to use.
Eight options are available:<ul>
<li>"magma" (or "A")</li>
<li>"inferno" (or "B")</li>
<li>"plasma" (or "C")</li>
<li>"viridis" (or "D")</li>
<li>"cividis" (or "E")</li>
<li>"rocket" (or "F")</li>
<li>"mako" (or "G")</li>
<li>"turbo" (or "H")</li>
</ul></dd></dl>

Arguments

Default color palette is the color-blind viridis palette.
See documentation of <code><a href='https://sjmgarnier.github.io/viridisLite/reference/viridis.html'>viridis</a></code>.

Colors of 'clinUtils' — clinColors

<dl>

<dt>n</dt>
<dd>The number of colors (\(\ge 1\)) to be in the palette.</dd>


<dt>alpha</dt>
<dd>The alpha transparency, a number in [0,1], see argument alpha in
<code><a href='https://rdrr.io/r/grDevices/hsv.html'>hsv</a></code>.</dd>


<dt>begin</dt>
<dd>The (corrected) hue in [0,1] at which the color map begins.</dd>


<dt>end</dt>
<dd>The (corrected) hue in [0,1] at which the color map ends.</dd>


<dt>direction</dt>
<dd>Sets the order of colors in the scale. If 1, the default,
colors are ordered from darkest to lightest. If -1, the order of colors is
reversed.</dd>


<dt>option</dt>
<dd>A character string indicating the color map option to use.
Eight options are available:<ul>
<li>"magma" (or "A")</li>
<li>"inferno" (or "B")</li>
<li>"plasma" (or "C")</li>
<li>"viridis" (or "D")</li>
<li>"cividis" (or "E")</li>
<li>"rocket" (or "F")</li>
<li>"mako" (or "G")</li>
<li>"turbo" (or "H")</li>
</ul></dd>

</dl>

clinColors: Colors of 'clinUtils'

Description

Usage

Value

Arguments