clusterProfiler (version 3.0.4)

GSEA: GSEA

Description

a universal gene set enrichment analysis tools

Usage

GSEA(geneList, exponent = 1, nPerm = 1000, minGSSize = 10, maxGSSize = 500, pvalueCutoff = 0.05, pAdjustMethod = "BH", TERM2GENE, TERM2NAME = NA, verbose = TRUE, seed = FALSE)

Arguments

geneList

order ranked geneList

exponent

weight of each step

nPerm

number of permutations

minGSSize

minimal size of each geneSet for analyzing

maxGSSize

maximal size of genes annotated for testing

pvalueCutoff

pvalue cutoff

pAdjustMethod

p value adjustment method

TERM2GENE

user input annotation of TERM TO GENE mapping, a data.frame of 2 column with term and gene

TERM2NAME

user input of TERM TO NAME mapping, a data.frame of 2 column with term and name

verbose

logical

seed

logical

Value

gseaResult object