clusterProfiler (version 3.0.4)

enrichDAVID: enrichDAVID

Description

enrichment analysis by DAVID

Usage

enrichDAVID(gene, idType = "ENTREZ_GENE_ID", listType = "Gene", minGSSize = 10, maxGSSize = 500, annotation = "GOTERM_BP_FAT", pvalueCutoff = 0.05, pAdjustMethod = "BH", qvalueCutoff = 0.2, species = NA, david.user)

Arguments

gene

input gene

idType

id type

listType

list Type

minGSSize

minimal size of genes annotated for testing

maxGSSize

maximal size of genes annotated for testing

annotation

david annotation

pvalueCutoff

pvalueCutoff

pAdjustMethod

one of "BH" and "bonferroni"

qvalueCutoff

qvalutCutoff

species

species

david.user

david user

Value

A enrichResult instance