clusterProfiler (version 3.0.4)

enricher: enricher

Description

A universal enrichment analyzer

Usage

enricher(gene, pvalueCutoff = 0.05, pAdjustMethod = "BH", universe, minGSSize = 10, maxGSSize = 500, qvalueCutoff = 0.2, TERM2GENE, TERM2NAME = NA)

Arguments

gene

a vector of gene id

pvalueCutoff

pvalue cutoff

pAdjustMethod

one of "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"

universe

background genes

minGSSize

minimal size of genes annotated for testing

maxGSSize

maximal size of genes annotated for testing

qvalueCutoff

qvalue cutoff

TERM2GENE

user input annotation of TERM TO GENE mapping, a data.frame of 2 column with term and gene

TERM2NAME

user input of TERM TO NAME mapping, a data.frame of 2 column with term and name

Value

A enrichResult instance