check_model

This function checks which of the available simulators can
simulate a given model. It also states the problems for the ones that
are incompatible with the model.

Coalescent simulators can rapidly simulate biological sequences
evolving according to a given model of evolution.
You can use this package to specify such models, to conduct the simulations
and to calculate additional statistics from the results (Staab, Metzler,
2016 <doi:10.1093/bioinformatics/btw098>).
It relies on existing simulators for doing the simulation, and currently
supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites
mutation models by combining the simulators with the program 'seq-gen'.
Coala provides functions for calculating certain summary statistics, which
can also be applied to actual biological data.
One possibility to import data is through the 'PopGenome' package
(<https://github.com/pievos101/PopGenome>).

Dirk Metzler

coala

A Framework for Coalescent Simulation

Paul Staab

Jorge E. Amaya Romero

check_model function

<dl><dt>model</dt>
<dd>The model which is checked</dd></dl>

Arguments

Check which simulator can simulate a model — check_model

<dl>

<dt>model</dt>
<dd>The model which is checked</dd>

</dl>

check_model: Check which simulator can simulate a model

Description

Usage

Arguments

See Also

Examples