scale_model

This function reduces the number of loci in all averaged loci by a
certain factor.
Non-averaged loci as created with <code>locus_single</code> are not
modified in any way. This function is primarily designed for jaatha,
and might be unsuitable for other purposes.

Coalescent simulators can rapidly simulate biological sequences
evolving according to a given model of evolution.
You can use this package to specify such models, to conduct the simulations
and to calculate additional statistics from the results (Staab, Metzler,
2016 <doi:10.1093/bioinformatics/btw098>).
It relies on existing simulators for doing the simulation, and currently
supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites
mutation models by combining the simulators with the program 'seq-gen'.
Coala provides functions for calculating certain summary statistics, which
can also be applied to actual biological data.
One possibility to import data is through the 'PopGenome' package
(<https://github.com/pievos101/PopGenome>).

Dirk Metzler

coala

A Framework for Coalescent Simulation

Paul Staab

Jorge E. Amaya Romero

scale_model function

<dl><dt>model</dt>
<dd>The model to downscale</dd>
<dt>scaling_factor</dt>
<dd>The factor by which the number of loci are reduced.
A value of 2 changes to numbers to half their value (rounded),
a value of 3 to a third an so on.</dd></dl>

Arguments

Function that downscales a coalescent model — scale_model

<dl>

<dt>model</dt>
<dd>The model to downscale</dd>


<dt>scaling_factor</dt>
<dd>The factor by which the number of loci are reduced.
A value of 2 changes to numbers to half their value (rounded),
a value of 3 to a third an so on.</dd>

</dl>

scale_model: Function that downscales a coalescent model

Description

Usage

Arguments

Examples