censored_translation: Censored Translation of a DNA string.
Description
Translate a DNA sequence using the censored translation table.
This translates codons for which the amino acids are unambiguous across
mitochondrial genetic codes across the animal kingdom and does not
translate those for which the amino acid varies,
but rather outputs a ? in the string.
Usage
censored_translation(dna_str, reading_frame = 1)
Arguments
dna_str
The DNA string to be translated.
reading_frame
Set the reading frame of the sequence. reading_frame = 1 (default)
means the first bp in the string is the start of the first codon, can pass: 1, 2, or 3.
i.e. reading_frame = 2 indicates that the second bp in the string is the start of the first codon.
#translate a string of DNA:censored_translation(example_nt_string)
#manually override the reading frame:censored_translation(example_nt_string, reading_frame = 2)