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coil (version 1.2.4)

set_frame: Take an input sequence and get it into the reading frame.

Description

Uses the path of the ntPHMM to locate the first contiguous set of 5 matching base pairs (5 sequential 1s) for both the front and the back of the sequence. Sequence information outside of this first set of matches is trimmed (low probability of being true barcode sequence).

Usage

set_frame(org_seq, path_out)

Arguments