alpha_to_logbf

convert alpha matrix to log BF matrix

Performs the colocalisation tests described in
Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>,
Wallace (2020) <doi:10.1371/journal.pgen.1008720>,
Wallace (2021) <doi:10.1101/2021.02.23.432421>.

Chris Wallace

coloc

Colocalisation Tests of Two Genetic Traits

Claudia Giambartolomei

Vincent Plagnol

alpha_to_logbf function

<dl><dt>alpha</dt>
<dd>an L by p+1 matrix of posterior inclusion probabilites</dd>
<dt>pi</dt>
<dd>per snp prior probability of causality</dd></dl>

Arguments

Author

alpha_to_logbf — alpha_to_logbf

<dl>

<dt>alpha</dt>
<dd>an L by p+1 matrix of posterior inclusion probabilites</dd>


<dt>pi</dt>
<dd>per snp prior probability of causality</dd>

</dl>

alpha_to_logbf: alpha_to_logbf

Description

Usage

Value

Arguments

Author