check_alignment

check.alignment

check alignment between beta and LD

Performs the colocalisation tests described in
Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>,
Wallace (2020) <doi:10.1371/journal.pgen.1008720>,
Wallace (2021) <doi:10.1371/journal.pgen.1009440>.

Chris Wallace

coloc

Colocalisation Tests of Two Genetic Traits

Claudia Giambartolomei

Vincent Plagnol

check_alignment function

<dl><dt>D</dt>
<dd>a coloc dataset</dd>
<dt>thr</dt>
<dd>plot SNP pairs in absolute LD &gt; thr</dd>
<dt>do_plot</dt>
<dd>if TRUE (default) plot the diagnostic</dd>
<dt>...</dt>
<dd>arguments passed to check_alignment()</dd></dl>

Arguments

Author

check alignment — check_alignment

<dl>

<dt>D</dt>
<dd>a coloc dataset</dd>


<dt>thr</dt>
<dd>plot SNP pairs in absolute LD &gt; thr</dd>


<dt>do_plot</dt>
<dd>if TRUE (default) plot the diagnostic</dd>


<dt>...</dt>
<dd>arguments passed to check_alignment()</dd>

</dl>

check_alignment: check alignment

Description

Usage

Value

Arguments

Author