coloc for susie output + a separate BF matrix
coloc.susie_bf(
dataset1,
bf2,
p1 = 1e-04,
p2 = 1e-04,
p12 = 5e-06,
susie.args = list(),
...
)coloc.signals style result
a list with specifically named elements defining the dataset
to be analysed. See check_dataset for details.
named vector of log BF, names are snp ids and will be matched to column names of susie object's alpha
prior probability a SNP is associated with trait 1, default 1e-4
prior probability a SNP is associated with trait 2, default 1e-4
prior probability a SNP is associated with both traits, default 1e-5
named list of arguments to be passed to susieR::susie_rss()
other arguments passed to coloc.bf_bf, in particular prior values for causal association with one trait (p1, p2) or both (p12)
Chris Wallace