finemap.bf

Finemap one dataset represented by Bayes factors

Performs the colocalisation tests described in
Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>,
Wallace (2020) <doi:10.1371/journal.pgen.1008720>,
Wallace (2021) <doi:10.1371/journal.pgen.1009440>.

Chris Wallace

coloc

Colocalisation Tests of Two Genetic Traits

Claudia Giambartolomei

Vincent Plagnol

finemap.bf function

<dl><dt>bf1</dt>
<dd>named vector of log BF, or matrix of log BF with colnames (cols=snps, rows=signals)</dd>
<dt>p1</dt>
<dd>prior probability a SNP is associated with the trait 1, default 1e-4</dd></dl>

Arguments

Author

Finemap data through Bayes factors — finemap.bf

<dl>

<dt>bf1</dt>
<dd>named vector of log BF, or matrix of log BF with colnames (cols=snps, rows=signals)</dd>


<dt>p1</dt>
<dd>prior probability a SNP is associated with the trait 1, default 1e-4</dd>

</dl>

finemap.bf: Finemap data through Bayes factors

Description

Usage

Value

Arguments

Author

Details