Converts a character reconstruction from phangorn into a vector of tip and node states. Nodes where there are equal weights among states, ties are broken at random.
ConvertPhangornReconstructions(x, site = 1, best = TRUE)The phyDat object that contains a character reconstruction from phangorn
The character number to convert into a vector
A logical indicating whether the state that maximizes some function (likelihood, parsimony, etc.) is to be returned.
Creates a vector that contains the best tips and node state from a phangorn reconstruction.